Honey is not a great oral antibacterial. That would be like taking amoxicillin mixed in water with 90% sugar syrup.
It’s not inherently.bad, context and amount matter. If you like the taste of honey, go ahead and use it, just pay attention to the total added sugars in your diet.
And no, the fact that it’s organic doesn’t make a difference.
Every consumable has an upper limit beyond which it is hazardous to our health. And honey is sugar, as you know. The antibacterial nature means that it doesn’t spoil, and it has been used to help wounds and burns heal.